Efficacy of metformin on protein profile in breast tumor cells by assessment in vitro and in silico analysis

Güven Yenmiş; Nail Beşli

doi:10.19161/etd.1126777

EN TR

Efficacy of metformin on protein profile in breast tumor cells by assessment in vitro and in silico analysis

Abstract

Aim: This study aimed to uncover the varieties in protein profiles of Met in breast tumor (BT) cells by assessment of in vitro and in silico analysis.

Materials and Methods: Here, the cells obtained from mastectomy patients were cultured, the effective Met-dose was determined as 25 mM through cell viability and BrdU tests. Protein identification in the breast tumor cells was implemented by employing LC-MS/MS technology.

Results: The expression of SSR3, THAP3, FTH1, NEFM, ANP32A, ANP32B, KRT7 proteins was significantly decreased whereas the GARS protein increased in the 25 mM Met group compared to the Non-Met (0 mM) control group. In silico analysis, we analyzed the probable interactions of all these proteins with each other and other proteins, to evaluate the analysis of the larger protein network, and which metabolic pathway proteins are involved in.

Conclusion: The stated proteomics analysis in our study proposes a better understanding of the prognosis of breast cancer and future studies to investigate the effect of metformin in this field on proteomic pathways in other sorts of cancer.

Keywords

In vitro ve in silico analizi ile metforminin meme tümörü hücrelerinde protein profili üzerindeki etkinliği

Öz

Amaç: Bu çalışmada, meme tümörü (BT) hücrelerinde Met'in protein profillerindeki çeşitlerin in vitro ve in siliko analizleri değerlendirilerek ortaya çıkarılması amaçlanmıştır.

Gereç ve Yöntem: Burada mastektomi hastalarından elde edilen hücreler kültürlendi, hücre canlılığı ve BrdU testleri ile etkin Met-doz 25 mM olarak belirlendi. Göğüs tümörü hücrelerinde protein tanımlaması, LC-MS/MS teknolojisi kullanılarak gerçekleştirilmiştir.

Bulgular: Proteomik analiz sonuçlarına göre, Non-Met (0 mM) kontrol grubuna kıyasla 25 mM Met grubunda SSR3, THAP3, FTH1, NEFM, ANP32A, ANP32B, KRT7 proteinlerinin ekspresyonu önemli ölçüde azalırken GARS proteininin ekpresyonu arttı. Silico analizde tüm bu proteinlerin birbirleriyle ve diğer proteinlerle olası etkileşimlerini analiz ederek daha büyük protein ağının analizini ve hangi metabolik yolak proteinlerinin rol oynadığını değerlendirdik.

Sonuç: Çalışmamızda belirtilen proteomik analizler, meme kanserinin prognozunun daha iyi anlaşılmasını ve metforminin diğer kanser türlerinde proteomik yolaklar üzerindeki etkisini araştırmak için gelecekteki çalışmaları önermektedir.

Anahtar Kelimeler

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Details

Primary Language

English

Subjects

Health Care Administration

Journal Section

Research Article

Authors

Güven Yenmiş
0000-0002-6688-9725
Türkiye

Nail Beşli ^*
0000-0002-6174-915X
Türkiye

Publication Date

June 13, 2022

Submission Date

September 2, 2021

Acceptance Date

December 29, 2021

Published in Issue

Year 2022 Volume: 61 Number: 2

DOI

https://doi.org/10.19161/etd.1126777

IZ

https://izlik.org/JA62EN59FY

Cite

RIS / Bibtex

Vancouver

1.Güven Yenmiş, Nail Beşli. Efficacy of metformin on protein profile in breast tumor cells by assessment in vitro and in silico analysis. EJM. 2022 Jun. 1;61(2):215-24. doi:10.19161/etd.1126777